AliAnalysisTaskChargedParticlesRefMC.cxx

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/**************************************************************************
 * Copyright(c) 1998-2015, ALICE Experiment at CERN, All rights reserved. *
 *                                                                        *
 * Author: The ALICE Off-line Project.                                    *
 * Contributors are mentioned in the code where appropriate.              *
 *                                                                        *
 * Permission to use, copy, modify and distribute this software and its   *
 * documentation strictly for non-commercial purposes is hereby granted   *
 * without fee, provided that the above copyright notice appears in all   *
 * copies and that both the copyright notice and this permission notice   *
 * appear in the supporting documentation. The authors make no claims     *
 * about the suitability of this software for any purpose. It is          *
 * provided "as is" without express or implied warranty.                  *
 **************************************************************************/
#include <array>
#include <iostream>
#include <memory>

#include <TClonesArray.h>
#include <THashList.h>
#include <TH1.h>
#include <THistManager.h>
#include <TLinearBinning.h>
#include <TList.h>
#include <TPDGCode.h>
#include <TMath.h>
#include <TString.h>

#include "AliAnalysisDataContainer.h"
#include "AliAnalysisManager.h"
#include "AliAnalysisUtils.h"
#include "AliAODMCHeader.h"
#include "AliAODInputHandler.h"
#include "AliAODMCParticle.h"
#include "AliAODTrack.h"
#include "AliEmcalAnalysisFactory.h"
#include "AliEmcalList.h"
#include "AliEmcalTrackSelection.h"
#include "AliEmcalTriggerOfflineSelection.h"
#include "AliEMCALTriggerPatchInfo.h"
#include "AliEMCALGeometry.h"
#include "AliEMCALRecoUtils.h"
#include "AliESDEvent.h"
#include "AliESDtrack.h"
#include "AliGenPythiaEventHeader.h"
#include "AliInputEventHandler.h"
#include "AliMCEvent.h"
#include "AliOADBContainer.h"
#include "AliVEvent.h"
#include "AliVEventHandler.h"
#include "AliVVertex.h"

#include "AliAnalysisTaskChargedParticlesRefMC.h"
#include "AliEMCalTriggerWeightHandler.h"

ClassImp(EMCalTriggerPtAnalysis::AliAnalysisTaskChargedParticlesRefMC)

namespace EMCalTriggerPtAnalysis {

AliAnalysisTaskChargedParticlesRefMC::AliAnalysisTaskChargedParticlesRefMC():
        AliAnalysisTaskEmcal(),
        fTrackCuts(nullptr),
        fTriggerSelection(nullptr),
        fHistos(nullptr),
        fWeightHandler(nullptr),
        fEventTriggers(),
        fEventWeight(1.),
        fYshift(0.465),
        fEtaSign(1),
        fEtaLabCut(-0.5, 0.5),
        fEtaCmsCut(-2., 2.),
        fPhiCut(0., TMath::TwoPi()),
        fFracPtHard(-1),
        fEnableSumw2(kFALSE),
        fStudyPID(kFALSE),
        fNameAcceptanceOADB()
{
  SetCaloTriggerPatchInfoName("EmcalTriggers");
  SetNeedEmcalGeom(true);
  SetMakeGeneralHistograms(kTRUE);
}

AliAnalysisTaskChargedParticlesRefMC::AliAnalysisTaskChargedParticlesRefMC(const char* name):
        AliAnalysisTaskEmcal(name, true),
        fTrackCuts(nullptr),
        fTriggerSelection(nullptr),
        fHistos(nullptr),
        fWeightHandler(nullptr),
        fEventTriggers(),
        fEventWeight(1.),
        fYshift(0.465),
        fEtaSign(1),
        fEtaLabCut(-0.5, 0.5),
        fEtaCmsCut(-2., 2.),
        fPhiCut(0., TMath::TwoPi()),
        fFracPtHard(-1),
        fEnableSumw2(kFALSE),
        fStudyPID(kFALSE),
        fNameAcceptanceOADB()
{
  SetCaloTriggerPatchInfoName("EmcalTriggers");
  SetNeedEmcalGeom(true);
  SetMakeGeneralHistograms(kTRUE);
}

AliAnalysisTaskChargedParticlesRefMC::~AliAnalysisTaskChargedParticlesRefMC() {
  //if(fTrackCuts) delete fTrackCuts;
  if(fTriggerSelection) delete fTriggerSelection;
  if(fHistos) delete fHistos;
}

void AliAnalysisTaskChargedParticlesRefMC::UserCreateOutputObjects() {
  AliAnalysisTaskEmcal::UserCreateOutputObjects();

  if(!fAliAnalysisUtils) fAliAnalysisUtils = new AliAnalysisUtils;
  fHistos = new THistManager("Ref");

  if(!fTrackCuts) InitializeTrackCuts("standard",fInputHandler->IsA() == AliAODInputHandler::Class());

  PtBinning newbinning;
  TString optionstring = fEnableSumw2 ? "s" : "";

  fHistos->CreateTH1("hPtHard", "Pt of the hard interaction", 1000, 0., 500);
  const std::array<TString,7> triggers = {"True", "MB", "EMC7", "EJ1", "EJ2", "EG1", "EG2"};
  const std::array<TString,6> species = {"El", "Mu", "Pi", "Ka", "Pr", "Ot"};
  for(const auto &trg : triggers){
    fHistos->CreateTH1(Form("hEventCount%s", trg.Data()), Form("Event Counter for trigger class %s", trg.Data()), 1, 0.5, 1.5, optionstring);
    fHistos->CreateTH1(Form("hVertexBefore%s", trg.Data()), Form("Vertex distribution before z-cut for trigger class %s", trg.Data()), 500, -50, 50, optionstring);
    fHistos->CreateTH1(Form("hVertexAfter%s", trg.Data()), Form("Vertex distribution after z-cut for trigger class %s", trg.Data()), 100, -10, 10, optionstring);

    fHistos->CreateTH3(Form("hPtEtaPhiAll%s", trg.Data()), Form("p_{t}-#eta-#phi distribution of all accepted tracks for trigger %s; p_{t} (GeV/c); #eta; #phi", trg.Data()), newbinning, TLinearBinning(64, -0.8, 0.8), TLinearBinning(100, 0., 2*TMath::Pi()), optionstring);
    fHistos->CreateTH3(Form("hPtEtaPhiEMCALAll%s", trg.Data()), Form("p_{t}-#eta-#phi distribution of all accepted tracks pointing to the EMCAL for trigger %s; p_{t} (GeV/c); #eta; #phi", trg.Data()), newbinning, TLinearBinning(64, -0.8, 0.8), TLinearBinning(100, 0., 2*TMath::Pi()), optionstring);
    fHistos->CreateTH3(Form("hPtEtaPhiCent%s", trg.Data()), Form("p_{t}-#eta-#phi distribution of all accepted tracks for trigger %s; p_{t} (GeV/c); #eta; #phi", trg.Data()), newbinning, TLinearBinning(64, -0.8, 0.8), TLinearBinning(100, 0., 2*TMath::Pi()), optionstring);
    fHistos->CreateTH3(Form("hPtEtaPhiEMCALCent%s", trg.Data()), Form("p_{t}-#eta-#phi distribution of all accepted tracks pointing to the EMCAL for trigger %s; p_{t} (GeV/c); #eta; #phi", trg.Data()), newbinning, TLinearBinning(64, -0.8, 0.8), TLinearBinning(100, 0., 2*TMath::Pi()), optionstring);

    if(fStudyPID){
      for(const auto &pid : species){
        fHistos->CreateTH3(Form("hPtEtaPhiAll%s%s", pid.Data(), trg.Data()), Form("p_{t}-#eta-#phi distribution of all accepted %s for trigger %s; p_{t} (GeV/c); #eta; #phi", pid.Data(), trg.Data()), newbinning, TLinearBinning(64, -0.8, 0.8), TLinearBinning(100, 0., 2*TMath::Pi()), optionstring);
        fHistos->CreateTH3(Form("hPtEtaPhiEMCALAll%s%s", pid.Data(), trg.Data()), Form("p_{t}-#eta-#phi distribution of all accepted %s pointing to the EMCAL for trigger %s; p_{t} (GeV/c); #eta; #phi", pid.Data(), trg.Data()), newbinning, TLinearBinning(64, -0.8, 0.8), TLinearBinning(100, 0., 2*TMath::Pi()), optionstring);
        fHistos->CreateTH3(Form("hPtEtaPhiCent%s%s", pid.Data(), trg.Data()), Form("p_{t}-#eta-#phi distribution of all accepted %s for trigger %s; p_{t} (GeV/c); #eta; #phi", pid.Data(), trg.Data()), newbinning, TLinearBinning(64, -0.8, 0.8), TLinearBinning(100, 0., 2*TMath::Pi()), optionstring);
        fHistos->CreateTH3(Form("hPtEtaPhiEMCALCent%s%s", pid.Data(), trg.Data()), Form("p_{t}-#eta-#phi distribution of all accepted %s pointing to the EMCAL for trigger %s; p_{t} (GeV/c); #eta; #phi", pid.Data(), trg.Data()), newbinning, TLinearBinning(64, -0.8, 0.8), TLinearBinning(100, 0., 2*TMath::Pi()), optionstring);
      }
    }
  }
  //fHistos->GetListOfHistograms()->Add(fTrackCuts);
  for(auto hist : *(fHistos->GetListOfHistograms())){
    fOutput->Add(hist);
  }

  PostData(1, fOutput);
}

bool AliAnalysisTaskChargedParticlesRefMC::IsEventSelected(){
  fEventTriggers.clear();
  AliDebugStream(1) << GetName() << ": Using custom event selection" << std::endl;
  if(!MCEvent()) return false;
  if(!fTriggerPatchInfo) return false;
  fEventWeight = fWeightHandler ? fWeightHandler->GetEventWeight(fPythiaHeader) : 1.;

  // Do MC outlier cut
  if(fIsPythia){
    if(!CheckMCOutliers()) return false;
  }


  // select trigger
  bool isMinBias;
  if((isMinBias = fInputHandler->IsEventSelected() & AliVEvent::kINT7)) fEventTriggers.push_back("MB");
  // In simulations triggered events are a subset of min. bias events
  if(fTriggerPatchInfo && fTriggerSelection){
    if(isMinBias && fTriggerSelection->IsOfflineSelected(AliEmcalTriggerOfflineSelection::kTrgEL0, fTriggerPatchInfo))
      fEventTriggers.push_back("EMC7"); // triggerstring.Contains("EMC7"),
    if(isMinBias && fTriggerSelection->IsOfflineSelected(AliEmcalTriggerOfflineSelection::kTrgEJ1, fTriggerPatchInfo))
      fEventTriggers.push_back("EJ1"); // triggerstring.Contains("EJ1"),
    if(isMinBias && fTriggerSelection->IsOfflineSelected(AliEmcalTriggerOfflineSelection::kTrgEJ2, fTriggerPatchInfo))
      fEventTriggers.push_back("EJ2"); // triggerstring.Contains("EJ2"),
    if(isMinBias && fTriggerSelection->IsOfflineSelected(AliEmcalTriggerOfflineSelection::kTrgEG1, fTriggerPatchInfo))
      fEventTriggers.push_back("EG1"); // triggerstring.Contains("EG1"),
    if(isMinBias && fTriggerSelection->IsOfflineSelected(AliEmcalTriggerOfflineSelection::kTrgEG2, fTriggerPatchInfo))
      fEventTriggers.push_back("EG2"); // triggerstring.Contains("EG2");
  }
  if(!fEventTriggers.size()){
    AliDebugStream(1) << GetName() << ": No trigger selected" << std::endl;
  }

  const AliVVertex *vtx = fInputEvent->GetPrimaryVertex();
  if(vtx->GetNContributors() < 1) return false;
  if(!fAliAnalysisUtils->IsVertexSelected2013pA(fInputEvent)) return false;       // Apply new vertex cut
  if(fAliAnalysisUtils->IsPileUpEvent(fInputEvent)) return false;                 // Apply new vertex cut
  // Fill reference distribution for the primary vertex before any z-cut
  fHistos->FillTH1("hVertexBeforeTrue", vtx->GetZ(), fEventWeight);
  for(const auto &trg : fEventTriggers) fHistos->FillTH1(Form("hVertexBefore%s", trg.Data()), vtx->GetZ(), fEventWeight);
  // Apply vertex z cut
  if(vtx->GetZ() < -10. || vtx->GetZ() > 10.) return false;


  // Fill Event counter and reference vertex distributions for the different trigger classes
  fHistos->FillTH1("hEventCountTrue", 1, fEventWeight);
  fHistos->FillTH1("hVertexAfterTrue", vtx->GetZ(), fEventWeight);
  for(const auto &trg : fEventTriggers){
      fHistos->FillTH1(Form("hEventCount%s", trg.Data()), 1, fEventWeight);
      fHistos->FillTH1(Form("hVertexAfter%s", trg.Data()), vtx->GetZ(), fEventWeight);
  }

  return true;
}

void AliAnalysisTaskChargedParticlesRefMC::ExecOnce(){
  AliAnalysisTaskEmcal::ExecOnce();

  if(!fLocalInitialized) {
    AliErrorStream() << GetName() << ": Failed initializing AliAnalysisTaskEmcal" << std::endl;
    return;
  }

  // Load acceptance OADB
  if(fNameAcceptanceOADB.Length() && fTriggerSelection){
    AliDebugStream(1) << GetName() << ": Loading acceptance map from OADB file " <<  fNameAcceptanceOADB << std::endl;
    AliOADBContainer acceptanceCont("AliEmcalTriggerAcceptance");
    acceptanceCont.InitFromFile(fNameAcceptanceOADB.Data(), "AliEmcalTriggerAcceptance");
    TObjArray *acceptanceMaps = dynamic_cast<TObjArray *>(acceptanceCont.GetObject(fInputEvent->GetRunNumber()));
    TH2 *map(nullptr);
    if((map = dynamic_cast<TH2 *>(acceptanceMaps->FindObject("EG1")))){
      AliDebugStream(1) << GetName() << ": Found acceptance map for trigger EG1" << std::endl;
      map->SetDirectory(nullptr);
      fTriggerSelection->SetAcceptanceMap(AliEmcalTriggerOfflineSelection::kTrgEG1, map);
    }
    if((map = dynamic_cast<TH2 *>(acceptanceMaps->FindObject("EG2")))){
      AliDebugStream(1) << GetName() << ": Found acceptance map for trigger EG2" << std::endl;
      map->SetDirectory(nullptr);
      fTriggerSelection->SetAcceptanceMap(AliEmcalTriggerOfflineSelection::kTrgEG2, map);
    }
    if((map = dynamic_cast<TH2 *>(acceptanceMaps->FindObject("DG1")))){
      AliDebugStream(1) << GetName() << ": Found acceptance map for trigger DG1" << std::endl;
      map->SetDirectory(nullptr);
      fTriggerSelection->SetAcceptanceMap(AliEmcalTriggerOfflineSelection::kTrgDG1, map);
    }
    if((map = dynamic_cast<TH2 *>(acceptanceMaps->FindObject("DG2")))){
      AliDebugStream(1) << GetName() << ": Found acceptance map for trigger DG2" << std::endl;
      map->SetDirectory(nullptr);
      fTriggerSelection->SetAcceptanceMap(AliEmcalTriggerOfflineSelection::kTrgDG1, map);
    }
    if((map = dynamic_cast<TH2 *>(acceptanceMaps->FindObject("EJ1")))){
      AliDebugStream(1) << GetName() << ": Found acceptance map for trigger EJ1" << std::endl;
      map->SetDirectory(nullptr);
      fTriggerSelection->SetAcceptanceMap(AliEmcalTriggerOfflineSelection::kTrgEJ1, map);
    }
    if((map = dynamic_cast<TH2 *>(acceptanceMaps->FindObject("EJ2")))){
      AliDebugStream(1) << GetName() << ": Found acceptance map for trigger EJ2" << std::endl;
      map->SetDirectory(nullptr);
      fTriggerSelection->SetAcceptanceMap(AliEmcalTriggerOfflineSelection::kTrgEJ2, map);
    }
    if((map = dynamic_cast<TH2 *>(acceptanceMaps->FindObject("DJ1")))){
      AliDebugStream(1) << GetName() << ": Found acceptance map for trigger DJ1" << std::endl;
      map->SetDirectory(nullptr);
      fTriggerSelection->SetAcceptanceMap(AliEmcalTriggerOfflineSelection::kTrgDJ1, map);
    }
    if((map = dynamic_cast<TH2 *>(acceptanceMaps->FindObject("DJ2")))){
      AliDebugStream(1) << GetName() << ": Found acceptance map for trigger DJ2" << std::endl;
      map->SetDirectory(nullptr);
      fTriggerSelection->SetAcceptanceMap(AliEmcalTriggerOfflineSelection::kTrgDJ1, map);
    }
  }
}

bool AliAnalysisTaskChargedParticlesRefMC::Run() {
  // MonteCarlo Loop
  // Histograms
  // - Full eta (-0.8, 0.8), new binning
  // - Eta distribution for tracks above 1, 2, 5, 10 GeV/c without eta cut
  // - Central eta_{cms} (-0.3, 0.3), new binning,
  // - Eta distribution for tracks above 1, 2, 5, 10 GeV/c
  // - Eta distribution for tracks above 1, 2, 5, 10 GeV/c with eta cut
  AliVParticle *truepart = NULL;
  Bool_t isEMCAL(kFALSE);
  for(int ipart = 0; ipart < fMCEvent->GetNumberOfTracks(); ipart++){
    truepart = fMCEvent->GetTrack(ipart);

    // Select only particles within ALICE acceptance
    if(!fEtaLabCut.IsInRange(truepart->Eta())) continue;
    if(!fPhiCut.IsInRange(truepart->Phi())) continue;
    if(TMath::Abs(truepart->Pt()) < 0.1) continue;
    if(!truepart->Charge()) continue;

    if(!IsPhysicalPrimary(truepart, fMCEvent)) continue;
    isEMCAL = (truepart->Phi() > 1.5 && truepart->Phi() < 3.1) ? kTRUE : kFALSE;

    // Calculate eta in cms frame according
    // EPJC74 (2014) 3054:
    // eta_cms = - eta_lab - |yshift|
    Double_t etacent = -1. * truepart->Eta() - TMath::Abs(fYshift);
    etacent *= fEtaSign;

    if(!fEtaCmsCut.IsInRange(etacent)) continue;    // Apply eta-cent cut

    // Get PID
    TString pid = "";
    if(fStudyPID){
      switch(TMath::Abs(truepart->PdgCode())){
      case kPiPlus: pid = "Pi"; break;
      case kMuonMinus: pid = "Mu"; break;
      case kElectron: pid = "El"; break;
      case kKPlus: pid = "Ka"; break;
      case kProton: pid = "Pr"; break;
      default: pid = "Ot"; break;
      };
    }

    // Particle selected (do not filter TRD sectors for MC truth)
    FillTrackHistos("True", fEventWeight, truepart->Pt(), truepart->Eta() * fEtaSign, etacent, truepart->Phi(), isEMCAL, pid);
  }

  // Loop over tracks, fill select particles
  // Histograms
  // - Full eta (-0.8, 0.8), new binning
  // - Eta distribution for tracks above 1, 2, 5, 10 GeV/c without eta cut
  // - Central eta (-0.8, -0.2), new binning,
  // - Eta distribution for tracks above 1, 2, 5, 10 GeV/c
  // - Eta distribution for tracks above 1, 2, 5, 10 GeV/c with eta cut
  AliVTrack *checktrack(NULL);
  AliVParticle *assocMC(NULL);
  double ptparticle(-1.), etaparticle(-100.), etaEMCAL(0.), phiEMCAL(0.);
  Bool_t hasTRD = kFALSE;
  for(int itrk = 0; itrk < fInputEvent->GetNumberOfTracks(); ++itrk){
    checktrack = dynamic_cast<AliVTrack *>(fInputEvent->GetTrack(itrk));
    if(!checktrack) continue;
    // Find associated particle
    assocMC = fMCEvent->GetTrack(TMath::Abs(checktrack->GetLabel()));
    if(!assocMC) continue;        // Fake track
    if(!IsPhysicalPrimary(assocMC, fMCEvent)) continue;

    // Select only particles within ALICE acceptance
    if(!fEtaLabCut.IsInRange(checktrack->Eta())) continue;
    if(!fPhiCut.IsInRange(checktrack->Phi())) continue;
    if(TMath::Abs(checktrack->Pt()) < 0.1) continue;
    if(checktrack->IsA() == AliESDtrack::Class()){
      AliESDtrack copytrack(*(static_cast<AliESDtrack *>(checktrack)));
      AliEMCALRecoUtils::ExtrapolateTrackToEMCalSurface(&copytrack);
      etaEMCAL = copytrack.GetTrackEtaOnEMCal();
      phiEMCAL = copytrack.GetTrackPhiOnEMCal();
    } else {
      AliAODTrack copytrack(*(static_cast<AliAODTrack *>(checktrack)));
      AliEMCALRecoUtils::ExtrapolateTrackToEMCalSurface(&copytrack);
      etaEMCAL = copytrack.GetTrackEtaOnEMCal();
      phiEMCAL = copytrack.GetTrackPhiOnEMCal();
    }
    Int_t supermoduleID = -1;
    isEMCAL = fGeom->SuperModuleNumberFromEtaPhi(etaEMCAL, phiEMCAL, supermoduleID);
    // Exclude supermodules 10 and 11 as they did not participate in the trigger
    isEMCAL = isEMCAL && supermoduleID < 10;
    hasTRD = isEMCAL && supermoduleID >= 4;  // supermodules 4 - 10 have TRD in front in the 2012-2013 ALICE setup

    if(!fTrackCuts->IsTrackAccepted(checktrack)) continue;

    ptparticle = TMath::Abs(assocMC->Pt());
    etaparticle = assocMC->Eta();

    // Calculate eta in cms frame according
    // EPJC74 (2014) 3054:
    // eta_cms = - eta_lab - |yshift|
    Double_t etacent = -1. * checktrack->Eta() - TMath::Abs(fYshift);
    etacent *= fEtaSign;

    if(!fEtaCmsCut.IsInRange(etacent)) continue;    // Apply eta-cent cut

    // Get PID
    TString assocpid = "";
    if(fStudyPID){
      switch(TMath::Abs(assocMC->PdgCode())){
      case kPiPlus: assocpid = "Pi"; break;
      case kMuonMinus: assocpid = "Mu"; break;
      case kElectron: assocpid = "El"; break;
      case kKPlus: assocpid = "Ka"; break;
      case kProton: assocpid = "Pr"; break;
      default: assocpid = "Ot"; break;
      };
    }
    for(const auto &trg : fEventTriggers)
      FillTrackHistos(trg, fEventWeight,  ptparticle, checktrack->Eta() * fEtaSign, etacent, checktrack->Phi(), isEMCAL, assocpid);
  }
  return true;
}

void AliAnalysisTaskChargedParticlesRefMC::FillTrackHistos(
    const TString &eventclass,
    Double_t weight,
    Double_t pt,
    Double_t etalab,
    Double_t etacent,
    Double_t phi,
    Bool_t inEmcal,
    const TString &pid
    )
{

  double kinepointall[3] = {TMath::Abs(pt), etalab, phi}, kinepointcent[3] = {TMath::Abs(pt), etacent, phi};
  fHistos->FillTH3(Form("hPtEtaPhiAll%s", eventclass.Data()), kinepointall, weight);
  fHistos->FillTH3(Form("hPtEtaPhiCent%s", eventclass.Data()), kinepointcent, weight);
  fHistos->FillTH3(Form("hPtEtaPhiAll%s%s", pid.Data(), eventclass.Data()), kinepointall, weight);
  fHistos->FillTH3(Form("hPtEtaPhiCent%s%s", pid.Data(), eventclass.Data()), kinepointcent, weight);

  if(inEmcal){
    fHistos->FillTH3(Form("hPtEtaPhiEMCALAll%s", eventclass.Data()), kinepointall, weight);
    fHistos->FillTH3(Form("hPtEtaPhiEMCALCent%s", eventclass.Data()), kinepointall, weight);
    fHistos->FillTH3(Form("hPtEtaPhiEMCALAll%s%s", pid.Data(), eventclass.Data()), kinepointall, weight);
    fHistos->FillTH3(Form("hPtEtaPhiEMCALCent%s%s", pid.Data(), eventclass.Data()), kinepointall, weight);
  }
}


void AliAnalysisTaskChargedParticlesRefMC::InitializeTrackCuts(TString cutname, bool isAOD){
  SetTrackSelection(AliEmcalAnalysisFactory::TrackCutsFactory(cutname, isAOD));
}



TString AliAnalysisTaskChargedParticlesRefMC::GetFiredTriggerClasses(const TClonesArray* triggerpatches) {
  TString triggerstring = "";
  Int_t nEJ1 = 0, nEJ2 = 0, nEG1 = 0, nEG2 = 0;
  double  minADC_EJ1 = 260.,
          minADC_EJ2 = 127.,
          minADC_EG1 = 140.,
          minADC_EG2 = 89.;
  for(TIter patchIter = TIter(triggerpatches).Begin(); patchIter != TIter::End(); ++patchIter){
    AliEMCALTriggerPatchInfo *patch = dynamic_cast<AliEMCALTriggerPatchInfo *>(*patchIter);
    if(!patch->IsOfflineSimple()) continue;
    if(patch->IsJetHighSimple() && patch->GetADCOfflineAmp() > minADC_EJ1) nEJ1++;
    if(patch->IsJetLowSimple() && patch->GetADCOfflineAmp() > minADC_EJ2) nEJ2++;
    if(patch->IsGammaHighSimple() && patch->GetADCOfflineAmp() > minADC_EG1) nEG1++;
    if(patch->IsGammaLowSimple() && patch->GetADCOfflineAmp() > minADC_EG2) nEG2++;
  }
  if(nEJ1) triggerstring += "EJ1";
  if(nEJ2){
    if(triggerstring.Length()) triggerstring += ",";
    triggerstring += "EJ2";
  }
  if(nEG1){
    if(triggerstring.Length()) triggerstring += ",";
    triggerstring += "EG1";
  }
  if(nEG2){
    if(triggerstring.Length()) triggerstring += ",";
    triggerstring += "EG2";
  }
  return triggerstring;
}

Bool_t AliAnalysisTaskChargedParticlesRefMC::IsPhysicalPrimary(const AliVParticle* const part, AliMCEvent* const mcevent) {
  Bool_t physprim = false;
  const AliAODMCParticle *aodmc = dynamic_cast<const AliAODMCParticle *>(part);
  if(aodmc){
    physprim = aodmc->IsPhysicalPrimary();
  } else {
    physprim = mcevent->IsPhysicalPrimary(part->GetLabel());
  }
  return physprim;
}

AliAnalysisTaskChargedParticlesRefMC *AliAnalysisTaskChargedParticlesRefMC::AddTaskChargedParticlesRefMC(const TString &name){
  AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();

  TString taskname = "chargedParticleMCQA_" + name;

  AliAnalysisTaskChargedParticlesRefMC *task = new AliAnalysisTaskChargedParticlesRefMC(taskname.Data());
  task->SetJetPtFactor(4.);
  task->SetTrackPtFactor(1.5);
  mgr->AddTask(task);

  TString outfile(mgr->GetCommonFileName());
  outfile += ":ChargedParticleQA_" + name;

  task->ConnectInput(0, mgr->GetCommonInputContainer());
  mgr->ConnectOutput(task, 1, mgr->CreateContainer(Form("TrackResults_%s", name.Data()), AliEmcalList::Class(), AliAnalysisManager::kOutputContainer, outfile.Data()));

  return task;
}

AliAnalysisTaskChargedParticlesRefMC *AliAnalysisTaskChargedParticlesRefMC::AddTaskChargedParticlesRefMCDefault(const TString &cutname){
  AliAnalysisManager *mgr = AliAnalysisManager::GetAnalysisManager();

  AliAnalysisTaskChargedParticlesRefMC *task = new AliAnalysisTaskChargedParticlesRefMC(Form("chargedParticleMCQA_%s", cutname.Data()));
  task->SetJetPtFactor(4.);
  task->SetTrackPtFactor(1.5);
  // Set Energy thresholds for additional patch selection:
  // These are events with offline patches of a given type where the trigger reached already the plateau
  // These numers are determined as:
  // EMC7: 5 GeV
  // EG1:  14 GeV
  // EG2:  8 GeV
  // EJ1:  22 GeV
  // EJ2:  12 GeV
  mgr->AddTask(task);
  task->SetOfflineTriggerSelection(
      EMCalTriggerPtAnalysis::AliEmcalAnalysisFactory::TriggerSelectionFactory(5, 14, 8, 22, 12)
  );
  task->SetTrackSelection(
      EMCalTriggerPtAnalysis::AliEmcalAnalysisFactory::TrackCutsFactory(
          cutname,
          mgr->GetInputEventHandler()->IsA() == AliAODInputHandler::Class()
      )
  );

  TString outfile(mgr->GetCommonFileName());
  outfile += ":ChargedParticleQA" + cutname;

  task->ConnectInput(0, mgr->GetCommonInputContainer());
  mgr->ConnectOutput(task, 1, mgr->CreateContainer(Form("TrackResults_%s", cutname.Data()), TList::Class(), AliAnalysisManager::kOutputContainer, outfile.Data()));

  return task;
}

AliAnalysisTaskChargedParticlesRefMC::PtBinning::PtBinning() :
    TCustomBinning()
{
  this->SetMinimum(0.);
  this->AddStep(1, 0.05);
  this->AddStep(2, 0.1);
  this->AddStep(4, 0.2);
  this->AddStep(7, 0.5);
  this->AddStep(16, 1);
  this->AddStep(36, 2);
  this->AddStep(40, 4);
  this->AddStep(50, 5);
  this->AddStep(100, 10);
  this->AddStep(200, 20);
}

} /* namespace EMCalTriggerPtAnalysis */